FastQCFastQC Report
Sun 21 May 2023
EGAF00007935830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404994
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18470.45605613910329534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17630.43531509108776917No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16060.3965490846777977No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12960.32000474081097496No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12640.3121033891860126No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11910.29407843079156726No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10860.2681521207721596No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8820.21778100416302462No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8480.20938581806150214No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8200.2024721353896601No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7200.17778041156165275No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5660.13975515686652148No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4940.1219771157103562No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4880.12049561228067576No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4870.1202486950423957No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4700.11605110199163446No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4650.11481651580023408No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT4330.10691516417527173No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4190.10345832283935069No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4180.10321140560107063No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4060.10024839874170975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)