FastQCFastQC Report
Wed 31 May 2023
EGAF00007935834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505177
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42740.8460401007963546No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35560.7039116982760498No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15050.2979153841128951No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14980.29652973116353276No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC13870.2745572343950734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13400.2652535645922122No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12240.2422913157170655No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC12160.24070771234636573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10270.20329508271358354No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9370.1854795447932111No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6370.12609441839196955No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5970.11817640153847069No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5440.10768502920758466No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5430.1074870787862472No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5190.10273626867414788No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5130.10154856614612304No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5070.1003608636180982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)