FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535752
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24330.45412802938673114No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG19370.3615478803625558No Hit
CGGACGGTATTTGGTACCGTTTGCCAGTTTCAGCGGGGTCTTGA16700.3117113888515582No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG15790.2947259179620421No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15460.28856635159551436No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15390.2872597769117054No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG14660.2736340694948409No Hit
TTCCAGAAAGCCGGCAATTGCACCGAAGAAGCCGCGTTCCTTCA13190.24619600113485346No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13100.24451611939852766No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12290.2293971837715958No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12070.22529080619391062No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10690.19953261957024893No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9170.17116128357896937No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9120.17022801594767728No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8870.16556167779121683No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8780.16388179605489106No Hit
TTTCAGCAGTTTGGCTGGCGGACGGTATTTGGTGCCGTTCGCCA8630.16108199316101482No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8590.16033537905598114No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG8550.15958876495094745No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8000.14932282100673447No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7650.14278994758768981No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG7270.13569711358986994No Hit
TTCCTTCAGCAGTTTCGCCGGTGGACGATATTTAGTGCCGTTTG7170.13383057832728576No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7150.13345727127476892No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7150.13345727127476892No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6770.12636443727694904No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6500.12132479206797175No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6370.11889829622661233No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6160.11497857217518553No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6120.11423195807015186No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6070.11329869043885978No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5960.11124550165001718No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5930.11068554107124193No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5800.10825904522988247No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5610.10471262823097253No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5510.10284609296838836No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5460.10191282533709627No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5390.10060625065328735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)