FastQCFastQC Report
Sun 21 May 2023
EGAF00007935838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535752
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43200.806343233436366No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24410.45562125759679856No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19740.36845406083411725No Hit
TCTCTGCCGCTGATCGGCGAAGCTGACTGTC17530.32720363153100684No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16430.3066717436425809No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG16100.30051217727605306No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15790.2947259179620421No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15630.29173946154190744No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC15100.28184682465021127No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14820.2766205259149756No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13470.2514222998700891No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13060.243769505293494No Hit
TGTCTGCACGAAAAATATGGTGGTCTGAACA12810.23910316713703356No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12460.2325702937179889No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12290.2293971837715958No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11520.21502486224969763No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10340.1929997461512043No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10070.187960100942227No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8740.16313518194985738No Hit
GAAGCTGACTGCCTGCACGAAAAATACGGTG8620.16089533963475636No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8610.16070868610849795No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8560.15977541847720586No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7790.14540309695530768No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7780.14521644342904927No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7680.14334990816646506No Hit
GCAGACTGCCTGCACGAAAAATACGGTGGCC7510.14017679822007198No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7510.14017679822007198No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7270.13569711358986994No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7130.1330839642222521No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6640.1239379414355896No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6520.12169809912048858No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6520.12169809912048858No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6270.11703176096402813No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6120.11423195807015186No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6110.11404530454389343No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6040.11273872986008451No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5740.10713912407233199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)