FastQCFastQC Report
Wed 31 May 2023
EGAF00007935841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532848
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG21540.40424286100351314No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19720.37008677896886166No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18970.35601147043809866No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18030.33837041707954235No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14430.27080893613188No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13160.24697474701978803No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12370.2321487553673843No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11840.22220220400564514No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10200.19142419601837674No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9410.17659820436597304No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9140.17153109329489835No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8410.15783112632495572No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8190.15370236915593188No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7890.1480722457436267No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7760.14563252559829445No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7710.14469417169624357No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG6610.12405038585112452No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6040.11335315136774464No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5870.11016274810077169No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5720.10734768639461911No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5720.10734768639461911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)