FastQCFastQC Report
Wed 31 May 2023
EGAF00007935842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532848
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41530.7793967510434495No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA22140.41550310782812355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19950.37440320691829565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19220.360703239948353No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18780.35244572561030535No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17250.3237320962075489No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14810.27794042578746664No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13150.24678707623937784No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12210.22914602288082153No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10660.20005705191724468No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9090.1705927393928475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8980.16852836080833558No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8590.16120920037233882No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7870.14769690418280634No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG6870.12892982614178902No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6500.12198600726661263No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6110.11466684683061586No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6020.11297780980692429No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5680.1065970032729784No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5560.10434495390805633No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5490.10303125844518511No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5390.10115455064108338No Hit
GTTCCGGAAGAAATCATCCCGGTTACCAAAC5350.10040386751944269No Hit

[OK]Adapter Content

Adapter graph