FastQCFastQC Report
Sun 21 May 2023
EGAF00007935843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555325
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11600.20888668797550983No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11560.20816638905145637No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC11120.20024310088686803No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10150.1827758519785711No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8810.15864583802277946No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7670.13811731868725521No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7210.12983388106064017No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6520.11740872462071761No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6200.11164633322828975No Hit
ACGACGATCACCGAAGTTGCGGTGTTCACCGCGTTTAAAGTCAC5810.10462341871876829No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5780.10408319452572819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)