FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440989
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38440.8716770713101687No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18250.4138425221490785No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8570.1943359131406906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7660.17370047778969544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7160.16236232649793986No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6870.15578619874872163No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6710.15215799033535984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6330.1435409953536256No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6250.14172689114694473No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5930.13447047432022113No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5930.13447047432022113No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5790.13129579195852958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)