FastQCFastQC Report
Sun 21 May 2023
EGAF00007935848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546170
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50220.9194939304612118No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45140.82648259699361No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20990.3843125766702675No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16730.3063148836442866No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14280.26145705549554166No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13550.24809125363897686No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12880.23582401083911603No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10700.1959096984455389No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7870.14409432960433563No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6930.12688357104930698No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6580.12047530988520058No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6560.12010912353296592No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6320.1157148873061501No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5840.10692641485251844No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5780.1058278557958145No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5780.1058278557958145No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5610.10271527180181995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)