FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519751
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC26200.5040875342231184No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25410.4888879482675358No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23800.4579115768897029No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21470.41308241831184545No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21060.4051940256007204No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20200.3886476408895798No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG19020.3659444618673172No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG18610.3580560691561921No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17570.3380464876450454No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG15680.30168292124498075No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT15320.29475652764496846No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT14840.2855213361782854No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14350.2760937448893797No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG12520.24088457742265046No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12070.23222658542263508No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11920.22934058808929658No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10970.211062604978153No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9180.176623036800314No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8340.1604614517336186No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8290.15949945262250578No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8100.15584385600027706No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG7720.1485326627558196No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7720.1485326627558196No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7350.14141386933358474No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6830.1314090785780114No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6390.12294348640021857No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6220.11967268942243497No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6120.11774869120020934No Hit
CTGCAGGTCTGGAAATTCGTCATCCTGGCACATGTGTACAACTG6100.1173638915557642No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5570.10716670097796831No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5560.10697430115574574No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5510.10601230204463291No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT5410.10408830382240726No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5330.10254910524462675No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5280.10158710613351392No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5220.10043270720017855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)