FastQCFastQC Report
Sun 21 May 2023
EGAF00007935851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525863
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT27060.5145826954929326No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG22260.4233041685762261No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21940.41721893344844574No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17080.3247994249452804No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15630.29722570327252534No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14640.2783995070959546No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13930.2648978916561918No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13180.25063562182545646No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12900.24531104108864854No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11970.2276258264985367No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11920.22667500850982097No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10530.20024226842352477No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10420.19815046884835022No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9670.18388819901761486No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC9610.18274721743115604No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8530.16220954887489708No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8370.15916693131100687No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7780.1479472790441617No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7550.14357351629606951No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7430.14129155312315184No Hit
ACCACCATCACATTCTACCACGCACGCCGGGCACGGCTGACAAT6980.1327341912247106No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6690.1272194468901596No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6140.11676044901428699No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5950.11314734065716738No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5440.1034489971722673No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5430.10325883357452416No Hit
CATACGGTCCAGGTCTTCGGTCGCGGAGCGAGCACGGGTGCTGG5370.10211785198806532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)