FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523174
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT35190.6726251686819299No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT14390.27505189478070396No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10970.2096816737834831No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9720.185789049149996No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7870.15042796469243502No Hit
GTGACGACGAGCCAGTTCAGCGGCCTGGCGTTTCGCTTCTTCCG6450.12328594310879364No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA6170.11793399519089251No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5700.10895036832870135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)