FastQCFastQC Report
Wed 31 May 2023
EGAF00007935854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523174
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42710.8163631984769885No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG34940.6678466437552325No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18690.35724252351989966No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG15010.2869026365989136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10730.20509428985385358No Hit
ACCCGTCAGAAAGCAGAACAGGAGCGTAGCT6970.13322527495632427No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC6710.12825560903255895No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5900.11277318827005928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)