FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482773
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT28960.5998678467934204No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA16780.3475753615053037No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14800.3065622973944276No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11540.23903573729268207No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10040.20796523417838195No Hit
CATCATCGGATCATCGAAGTACACGCGAGTTTCGGCAGAAGCAT9440.19553703293266195No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9410.19491562287037592No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8850.18331596837437056No Hit
CAGCGCCGGCAGGGTTTCTACGGAGTGAGACGGGAAAGCCCAGT8760.18145173818751256No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8340.17275199731550853No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8060.16695217006750585No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7600.15742388244578714No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7400.1532811486972138No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7400.1532811486972138No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7250.1501740983857838No Hit
GTGGTCACCGTTGGTGGAGGTGGTGCCGGAGAACGTATGGGTGT7200.14913841494864044No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6840.14168149420120843No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5960.12345346570748572No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5710.11827504852176902No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG5490.11371804139833835No Hit
CAGTGGGTCACCCAGGGACAGCTGGCTGTTCACCTCTTTACGCA5240.10853962421262166No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5020.10398261708919097No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4970.10294693365204766No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4950.10253266027719031No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4910.10170411352747565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)