FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489194
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14500.2964059248478109No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14180.2898645527132385No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12470.2549090953691174No Hit
CGGCGGCAGCGGCAGGCCTGCGCGGTTGGTCAGGCTACCGCTGA10820.22118014530022853No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10090.2062576401182353No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9760.19951185010445754No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8860.18111424097597273No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7220.1475897087862893No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7130.14574994787344078No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6850.14002624725568996No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6790.13879973998045766No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6600.1349158002755553No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6520.1332804572419122No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6500.13287162148350143No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6440.1316451142082691No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6330.12939651753700987No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6320.12919209965780448No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6200.12673908510733983No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG6100.12469490631528597No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5750.11754028054309741No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5720.11692702690548125No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5630.11508726599263278No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5480.11202099780455198No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5050.10323102899872033No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5000.10220893960269341No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4920.10057359656905031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)