FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539562
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT27460.5089313183656373No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT25960.4811309914337926No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25910.48020431386939777No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18900.3502841193412434No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16660.3087689644563553No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15170.2811539730373896No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15160.2809686375245106No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13310.24668156764190213No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12550.23259606866310084No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12430.23037204250855323No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11530.2136918463494464No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8990.16661662607818933No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8720.1616125672304573No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8440.15642317286984628No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7430.13770428606907084No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6790.12584281324481708No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6500.12046808337132713No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5530.10249053862206753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)