FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500968
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11360.22676099072196226No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7590.15150668306159276No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6630.13234378243720157No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5360.10699286181951742No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5100.10180290956707813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)