FastQCFastQC Report
Sun 21 May 2023
EGAF00007935866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510273
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33050.6476925096957903No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11390.22321384827337526No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9060.17755201627364176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7500.14698014592188888No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7270.1424727547802843No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6890.13502576072024192No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6840.13404589308076267No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6240.12228748140701154No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6220.12189553435121983No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5840.11444854029117747No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5760.11288075206801065No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5370.10523778448007243No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5210.10210220803373882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)