FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556648
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43860.7879306132421207No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG22510.40438481769448553No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21950.3943246001063509No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG20020.35965277877581525No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18730.3364783489745764No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17550.31528003334243543No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG17350.3116870984895302No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14720.2644400051738262No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14610.26246389100472833No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12660.22743277618890215No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12550.22545666201980427No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11580.20803092798321382No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11270.20246187896121068No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10330.18557508515255602No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10070.1809042698437792No Hit
AAAGAAGACATCCGTGACAACATTGTCTCCT9920.17820956870410024No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9500.17066440551299925No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9330.16761041088802978No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9210.16545464997628662No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8540.15341831821905405No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8440.15162185079260143No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8370.15036432359408458No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7540.1354536439545278No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG7130.12808812750607204No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6990.12557307310903837No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6980.12539342636639314No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6630.11910579037380895No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6430.1155128555209037No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6390.11479426855032265No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6080.10922521952831951No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5570.10006323565341113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)