FastQCFastQC Report
Sun 21 May 2023
EGAF00007935871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563145
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16380.2908664731108329No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15000.2663612391124843No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13300.23617363201306946No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10640.18893890561045557No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA10320.18325653250938923No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8340.1480968489465413No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8240.14632110735245807No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7680.136376954425592No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7610.13513393530973372No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG7600.13495636115032542No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7120.1264328014987259No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5640.10015182590629411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)