FastQCFastQC Report
Wed 31 May 2023
EGAF00007935872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563145
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36030.6397996963481873No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13420.23830452192596932No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10530.186985589856964No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA10250.18201351339353097No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9630.17100391551021493No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9320.16549911656855695No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8550.15182590629411608No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA8470.1504053130188495No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG8260.14667625567127474No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8230.14614353319304973No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC8060.14312477248310826No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7680.136376954425592No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7570.13442363867210044No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG7240.1285636914116258No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7200.1278533947739925No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7060.12536735654227596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)