FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563524
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17260.30628686622042717No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14380.25517990360658993No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13180.23388533585082444No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10900.19342565711487No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA10100.17922927861102633No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8230.14604524385829176No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7870.13965687353156211No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7700.13664014309949532No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7320.12989686331016959No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7110.1261703139529106No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG6940.12315358352084384No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5640.10008446845209786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)