FastQCFastQC Report
Sun 21 May 2023
EGAF00007935875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences600203
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16730.2787390266293237No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14070.2344206876673392No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12590.20976236373360346No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8660.14428451707172407No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8630.14378468618117538No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7420.12362484026237791No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7360.1226251784812805No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7290.12145890640333354No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6560.10929635473331523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)