FastQCFastQC Report
Sun 21 May 2023
EGAF00007935876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences600203
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35010.5833026492703303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17940.2988988725481212No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16210.2700752911931463No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10810.18010573089438073No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10320.17194182634875202No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8750.14578400974337016No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7950.1324551859954049No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7160.11929297254428918No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6650.11079584740496132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)