FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570974
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35430.6205186225642498No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32020.5607961133081366No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17390.30456728327384436No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16670.29195725199396116No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13550.23731378311446757No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10270.17986808506166657No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA10030.1756647413017055No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9040.15832594829186616No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8780.1537723258852417No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8090.1416877125753537No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7480.13100421385211936No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6690.11716820730891424No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6460.1131400028722849No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6340.11103833099230438No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6230.10911179843565556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)