FastQCFastQC Report
Wed 31 May 2023
EGAF00007935879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533776
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT14410.2699634303528072No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10430.19540031773627886No Hit
ACGACCTTCGCCACGGCGACGGCGGCGCTGGTTCAGCGGAGCAC6370.11933844908725758No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT6110.11446749198165522No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5990.11221935793291568No Hit
GTCAGAGGCGGCAGTCAGCTGGTTCGCGCTGAACGTACGCGGGG5830.10922184586792962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)