FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533776
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43810.820756272293996No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14250.2669659182878211No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10430.19540031773627886No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6200.11615359251820989No Hit
GAACGTTGTTGCGAGGAACTGCAGCGTATGT6160.11540421450196338No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6140.1150295254938401No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6120.11465483648571687No Hit
ATGCGTATCAAACGTACCTCCAACCGTTCCA5740.10753574533137497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)