FastQCFastQC Report
Sun 21 May 2023
EGAF00007935882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517544
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62821.2138098403227553No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42070.8128777456602723No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9460.1827863911087753No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9370.18104740852951634No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9290.1795016462368417No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6610.1277186094322415No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA6070.11728471395668774No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6070.11728471395668774No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6030.11651183281035041No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5620.10858980106039293No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5560.10743047934088695No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5490.10607793733479665No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5350.10337285332261606No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5320.10279319246286306No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5250.10144065045677275No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5230.1010542098836041No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)