FastQCFastQC Report
Wed 31 May 2023
EGAF00007935884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564013
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36060.6393469654068258No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21120.37445945394875646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17870.31683666865834653No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15620.2769439711496012No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12970.22995923852818997No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10930.19378985945359414No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10700.1897119392638113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10420.18474751468494519No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9280.16453521461384757No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9160.16240760408004778No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7660.13581247240755087No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7640.1354578706519176No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7460.132266454851218No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA7240.12836583553925174No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6990.12393331359383561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)