FastQCFastQC Report
Sun 21 May 2023
EGAF00007935886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528560
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53151.0055622824277282No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22850.43230664446798855No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16230.3070606932041774No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9000.1702739518692296No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8910.1685712123505373No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8670.1640305736340245No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7950.15040865748448615No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG7490.14170576661116996No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7370.13943544725291357No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7140.1350840018162555No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG7090.134138035416982No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6850.1295973967004692No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6340.11994853942787953No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6260.11843499318904194No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5540.10481307703950354No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5460.10329953080066595No Hit
GCCAGCGCACAGGGTACGGCGGACGATACCA5380.10178598456182836No Hit
GAAGCAACTATCAAAAAAGAACAGAAGCTGA5330.10084001816255486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)