FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585015
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAGCAGATAGCGTTCTGCTTCGATTGCGGCGCTGCAACCCA169562.8983872208404913No Hit
GAAGCCGTAGTTGTAAAAGTCCCAAGAACCATATTTGGCGTGCA64111.0958693366836747No Hit
GATACCCGGGGTTACTTTGTCCAGAGCTTTGATCATTTCGTCGA51360.8779262070203329No Hit
TACGGTGCAGGTATAGTAAGAGTGGAAGAAGAGAAGCTCGGGCT48660.8317735442680958No Hit
ACCGGATACGTCGATAACCCACCATTTGTCACGGTGTTTGAAGT44140.7545105681050913No Hit
GAAGGCGGCGATGTCAGCAGTGGTAATCGCCTTGCCCGGCAGGG38540.6587865268411921No Hit
TTCTTTACCCATCTGGTCGCTGTCCGGGGTACGCACGTACAGCG36970.6319496081297061No Hit
GGACGGAGCTGGAGACGCGGCACGCAGGCTCGCATAACCACGGT30040.5134911070656308No Hit
TTCATCCGCGACAGCAGAGGCGGCAACGGAGTCTGCGGCAGAAT28510.4873379315060298No Hit
TTCTTTGGTGAAGCGGGTGACATAATCTGGGTCCACGTCGTACA18200.31110313410767243No Hit
GCGTGCGGACACAATACCCAGCTGAGCGCCGTCCGGACCAATCA15590.2664888934471766No Hit
ACGGAAGTCCCAGCCTTTCCACGCGGCGTCCAGGGTCAGGCCGA14770.2524721588335342No Hit
GTCGGTCGGGCGGGCGTCAGCGTTTTTGACCCAGAAGAATTTCC14260.2437544336470005No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12120.2071741750211533No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11190.19127714673982718No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10930.18683281625257472No Hit
CAGGGTGCCAAAGTCGGTCGGAGCGAAGCCCAGATCACCGATTT8930.15264565865832502No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG8260.14119296086425134No Hit
CTGTTCGATATCGGTCAGAAAGACGCTTTGGACATCTGGGTGGC7980.1364067588010564No Hit
ATACAGGGCGCGCGCACGGTCTTCATCGGACAGTTTCAGTTTCA7530.1287146483423502No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7510.1283727767664077No Hit
TTTGACGGAAATGCGACGTTTCTTGCTAACGAATACGATGCCTG7270.12427031785509773No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7210.12324470312727023No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6960.11897130842798902No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6140.10495457381434663No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5930.10136492226695043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)