FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564885
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13960.24712994680333167No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12060.21349478212379513No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8850.15666905653363075No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8820.1561379749860591No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8640.15295148570062933No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8470.14994202359772343No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8310.1471095886773414No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7900.13985147419386246No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7690.13613390336086106No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7630.1350717402657178No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7330.1297609247900015No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6350.1124122609026616No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6130.10851766288713632No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5880.10409198332403939No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5840.1033838745939439No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5680.10055143967356188No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5680.10055143967356188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)