FastQCFastQC Report
Wed 31 May 2023
EGAF00007935892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564885
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16810.29758269382263647No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14500.256689414659621No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9470.16764474185011108No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9350.16552041565982456No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9060.16038662736663215No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9000.15932446427148889No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8720.15436770316082035No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8570.15171229542296222No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8460.14976499641519955No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8260.14622445276472204No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8040.14232985474919674No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8030.14215282756667286No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8020.14197580038414898No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7620.13489471308319392No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6910.1223257831239987No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6810.12055551129875992No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6420.11365145118032874No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6270.11099604344247059No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5910.10462306487161104No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5720.10125954840365739No Hit

[OK]Adapter Content

Adapter graph