FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562289
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31670.5632334973652339No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30060.5346005346005346No Hit
ATGTCCAACATGGACATCGATGGTATTAACA24430.43447408716869795No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18760.33363626177997435No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15760.2802829150134539No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14720.26178708813439355No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13890.24702599552898957No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12360.21981578867806412No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10460.18602533572593452No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9540.16966364271753495No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9490.16877442027142625No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8310.14778877054326156No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7260.1291150991749794No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7100.12626958734743166No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7090.12609174285820993No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6410.11399831759113196No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6280.11168633923124942No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6140.10919651638214513No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5790.10297195925938442No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5750.10226058130249746No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5700.1013713588563888No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5660.10065998089950184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)