FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556452
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT45020.8090545096432397No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC42290.7599936742072991No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC40940.7357328215191966No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG30070.5403880298749937No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC22770.4091997153393284No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21990.3951823337862026No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21520.38673596285034467No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20480.36804612077951016No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12680.22787230524825142No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9940.17863175979239898No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT9370.1683882886574224No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8920.16030133776138822No Hit
GTATTTCACGGAGCCCTGACCAGACGCAGTACCACCGCCGCGCG8710.15652742734323896No Hit
AGAAGCAACCGCGCTAACCGCGTCTTCCAGCTGCAGGGTCTGCT7520.1351419349737264No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6960.12507817385866166No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6930.12453904379892607No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6900.12399991373919043No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6560.11788977306218684No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC6360.11429557266394944No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6250.11231876244491888No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5940.1067477518276509No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5890.10584920172809155No Hit
CGGAGCCTGAGTGGTGGTGGTGGAGCGGTCAGATTCAACGTTAG5600.10063761115064732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)