FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556452
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA97221.747140813583202No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA57661.0362079748118436No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA54370.9770833782608384No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44900.8068979894042972No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21450.3854779927109616No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13020.233982445925255No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10430.1874375507680806No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9520.17108393895610044No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT9300.1671303185180393No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9170.16479408825918498No Hit
ATTGACACTATGAAATCCATGCAGCGTGATG7810.14035352555117062No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7780.139814395491435No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7360.13226657465513647No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7320.131547734575489No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7270.13064918447592966No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6960.12507817385866166No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6930.12453904379892607No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6800.12220281354007173No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6790.12202310352015988No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6300.11321731254447824No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5930.10656804180773903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)