FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562832
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59591.0587528783011626No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31570.5609133809022941No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT24230.43050146402478895No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19190.34095431674105237No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15410.27379395627825No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14050.24963044034454332No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13810.2453662904738892No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11600.2061005770816158No Hit
CCGAATGACAAACCATTCCAGAACGTTAACC11560.2053898854365068No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10200.18122636950280013No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9770.17358643431787815No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8900.15812889103675698No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8800.15635216192398443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8140.1446257497796856No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7920.140716945731586No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7780.13822952497370442No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7400.1314779543451687No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7340.1304119168775052No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7290.1295235523211189No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7220.12827984194217812No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7150.12703613156323734No Hit
TCCATTCCGAACGACAAACCATTCCAGAACG7100.12614776700685107No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6940.12330500042641498No Hit
AAGCTGGCTACCGGTATGCGCAACGTCCCGG6850.12170594422491968No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6730.11957386928959264No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6700.11904085055576086No Hit
TCTGAATGTATCACTCCGAACGGTTCCATTC6130.10891349461295734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)