FastQCFastQC Report
Wed 31 May 2023
EGAF00007935899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554480
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19290.3478935218583177No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC17600.31741451450007213No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16970.30605251767421726No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16540.29829750396768145No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11860.2138940989756168No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA10370.18702207473669022No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8180.14752560958014715No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7140.12876929735968837No Hit
GAAGGTGCCGGTGCCAGCCACGCTCGGTGCAAAAATGGCGTTGG6770.1220963785889482No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6640.11975183956139085No Hit
CTTGGTCACACGCGGGCCGTAAGTAGCGGTACCGTCCGCGTGGG6080.10965228682729765No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6040.10893089020343386No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5690.1026186697446256No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5650.1018972731207618No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5590.10081517818496609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)