FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554480
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40810.7360049054970422No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG18330.3305800028855865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16340.2946905208483624No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12810.23102726879238206No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG10730.19351464435146443No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9360.16880680998412928No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8380.15113259269946616No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7880.14211513490116867No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7430.13399942288270092No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7030.1267854566440629No Hit
TCTGCGGACGGCGTAAACTGGACCACTCTGT6940.12516231424036936No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6620.11939114124945895No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6360.11470206319434426No Hit
GACACCGGCTGGCGTAAAATTAATAACGATT5990.10802914442360409No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5960.10748809695570626No Hit
CAGGTCTCTTATGGTGCACGTCCGACCCAGA5820.10496320877218293No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5790.1044221613042851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)