FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences618477
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25080.4055122502534452No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24110.38982856274364286No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19190.310278312693924No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18780.3036491251897807No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17920.28974400018109003No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14970.24204618765127886No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14350.23202156264501347No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13250.21423593763389748No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12780.2066366251291479No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12640.20437300012773313No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11660.18852762511782978No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10800.17462250010913904No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC10750.1738140626086338No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9140.14778237509236397No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8570.13856618758660386No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8160.13193700008246062No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6880.11124100006952563No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6820.11027087506891929No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6780.10962412506851507No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6670.10784556256740348No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6360.1028332500642708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)