FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences618477
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA54330.87844818804903No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30320.49023650030639787No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27360.44237700027648563No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27210.43995168777496985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24540.39678112524798825No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19120.30914650019321654No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15290.24722018765451262No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14400.23283000014551877No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12200.19725875012328672No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC10950.1770478126106549No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10400.16815500010509687No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9690.15667518759792198No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8940.14454862509034289No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8630.1395363125872102No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7250.11722343757326464No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT7010.11334293757083935No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6880.11124100006952563No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6470.10461181256538239No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6390.10331831256457395No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6350.10267156256416972No Hit

[OK]Adapter Content

Adapter graph