FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549215
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18800.34230674690239704No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17920.32628387789845503No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16900.3077119160984314No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14690.26747266553171345No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14530.26455941662190585No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13610.24780823539051192No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12460.22686925885126952No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11420.20793314093751994No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10890.19828300392378215No Hit
GACAGACGGTGGACGCGGGATGAAACGGCGGGATTTACGACGGT10560.19227442804730388No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10520.19154611581985195No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA9890.1800751982374844No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9730.1771619493276768No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8850.16113908032373478No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8160.14857569440018936No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7960.14493413326292984No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7680.13983594767076646No Hit
CTGACGGCCAACACGGCCACGGCGCTGTGCGGCAGACGCGGTAG6880.12526970312172828No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6840.12454139089427638No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6690.12181022004133173No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6480.1179865808472092No Hit
AATGTTGGTGCGGCCATCGATAACACGGGACACGTCCAGGTTTG6230.11343462942563476No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5900.10742605354915652No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5630.10250994601385614No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5500.10014293127463744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)