FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549215
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35410.6447383993518021No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26130.4757699625829593No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18170.33083582932002953No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17340.3157233506004024No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16350.2976976229709677No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15830.28822956401409283No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14980.2727529291807398No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12540.22832588330617334No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11130.20265287728849357No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11110.20228872117476765No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT10370.18881494496690732No Hit
TCCGTAGGCGACGGTGAAACTGTTGAATTTG10290.1873583205120035No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9970.1815318226923882No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9410.1713354515080615No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9160.16678350008648707No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9130.16623726591589813No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8790.16004661198255693No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8750.159318299755105No Hit
CGTGACGAGAAACCGGACTTCGTTGTAACCA7130.12982165454330272No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6730.12253853226878364No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6530.11889697113152409No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6220.1132525513687718No Hit
CGCCAGAAGGGTAAAAGCGTAATCTGCCTGA6190.11270631719818287No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6060.11033930245896416No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6030.10979306828837523No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5920.10779020966288247No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5530.10068916544522637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)