FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563784
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC19970.35421367048373137No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12130.21515332113007818No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9840.17453492827040143No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8750.15520128276077363No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7620.13515814567281087No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7350.13036907751904986No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5990.10624636385566104No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5810.10305365175315367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)