FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409707
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11260.27483054963669157No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10150.24773801765652037No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9560.233337482640033No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9460.23089671399317072No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7900.1928207231021193No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG6790.16572819112194812No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT6720.16401965306914454No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6590.16084665382822358No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG6440.15718550085793018No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5580.13619489049491465No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5060.12350289353123085No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4960.1210621248843686No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4880.11910950996687876No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4690.11447204953784046No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4320.10544120554445005No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4120.10055966825072553No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4110.1003155913860393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)