FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409707
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21160.5164666456760564No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11360.27727131828355384No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10510.25652478478522456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10070.2457854027390306No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10050.24529724900965813No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9870.24090386544530604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9320.22747963788756356No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8030.19599372234304027No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA7530.1837898791087289No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7320.17866426495031815No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA7070.17256234333316248No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6760.16499596052788945No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6600.16109073069290983No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5490.13399819871273863No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5210.12716404650152424No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5110.124723277854662No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4760.11618058759064404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4480.1093464353794297No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4340.10592935927382251No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4180.10202412943884288No Hit

[OK]Adapter Content

Adapter graph