FastQCFastQC Report
Wed 31 May 2023
EGAF00007935911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403143
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13950.34603106093867436No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12400.3075831652788216No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8160.20240956682864392No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7750.19223947829926355No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5880.1458539525676993No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5850.14510979974847635No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5470.13568386403831892No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4060.10070868153484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)