FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410161
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9260.22576500447385298No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8680.2116242158567002No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7970.1943139401357028No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6990.17042088350672052No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6700.16335048919814416No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6010.14652782687773824No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5950.14506498667596382No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5490.1338498784623599No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4880.11897766974431992No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4570.11141966203515204No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4360.10629972132894157No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4130.1006921672221396No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4120.10044836052184386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)