FastQCFastQC Report
Wed 31 May 2023
EGAF00007935914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410161
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60761.4813695109969012No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12910.31475445008179714No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12190.29720036766050406No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9080.22137648386852965No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8680.2116242158567002No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8450.20601666174989822No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7460.18187979842062021No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.1791979247173671No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6540.15944958199341233No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5550.13531271866413433No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4600.11215108213603928No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4390.10703114142982878No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4180.10191120072361827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)