FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403461
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16580.410944304406126No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15800.3916115807971526No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT15030.37252671261906356No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT12720.31527210808479633No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12530.31056285489799507No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11960.2964350953375915No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10980.2721452631109327No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10810.2679317207859No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10150.2515732623475379No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA9980.24735972002250528No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8400.20819856194279002No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8040.19927576643095618No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT7760.19233581436619648No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7310.18118231997640416No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7280.18043875368375134No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7040.17449022334252878No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG6490.1608581746438937No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6490.1608581746438937No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6410.1588753311968195No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6190.15342251171736548No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6180.15317465628648122No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5950.14747398137614293No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5840.1447475716364159No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5780.14326043905111027No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5590.13855118586430906No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5480.13582477612458205No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5470.13557692069369776No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5050.12516699259655828No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5030.12467128173478974No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5000.12392771544213692No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5000.12392771544213692No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4950.12268843828771554No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG4840.11996202854798854No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4640.11500491993030304No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4640.11500491993030304No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4450.11029566674350184No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4290.10632997984935347No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4110.10186858209343655No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4090.10137287123166801No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4090.10137287123166801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)